First of all epoxy won't chip away as it dries harder and stronger than the granite. Silicone is an easy fix but it will collect dust and tend to look worse for wear over time.
The Crystal knife grade will not be glass clear due to its components which make it a knife grade consistency. The knife grade will dry and look clear like ice looks.
The liquid Crystal will dry water clear (glass clear) if mixed correctly. Being a flowing low viscosity product if the gaps are vertical and go through the materials you need to block that up to keep the glue in place. Create a dam with plastic tape or silicone at the bottom of the gap and then fill to flush with the liquid Crystal. It too will cure harder than granite and you will not chip it either.
Here is the link:
http://www.defusco.com/Glues:-Epoxy,-Polyester,-etc.-Tenax-Crystal-Mastic/c82_321/p2301/TENAX-CRYSTAL-FLOWING-MASTIC---1-LITER/product_info.htmlGlad to be of service,
Mark